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GOAL: Implements the method eQTeL: Bayesian tool to integrate genetic and epigenetic data to find causal expression regulatory polymorphisms [Ref# 100]

Mimosa: A tool to partition expression samples into relevant and non-relevant subsets with respect to co-expression of a given pair of genes [Ref# 65]

PTM-Switchboard: A database of post-translational-modification mediated regulation of transcription factor activity [Ref# 63]

PSPA: Position-specific propensity analysis - a tool for eukaryotic core promoter prediction [Ref# 37]

PWM-SCAN: A tool to scan DNA sequences with positional weight matrices (PWM) [Ref# 24]