Appendix A. Software and Databases for Computational Biology on the Internet

This page is a supplement to the book Computational Methods in Molecular Biology, edited by Steven Salzberg, David Searls, and Simon Kasif. The publisher is Elsevier Sciences. Please contact Steven Salzberg ( if you wish to have your software referenced on this site, or if you wish to change the description of your software already listed here.  NOTE: many of the links below are now out of date - this list first appeared in 1998 - but I updated some of them in 2006 and 2007.


Motif Search

Secondary Structure Prediction

Other software and information sources

Gene finders and other sequence analysis programs

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